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| Acceso al texto completo restringido a Biblioteca INIA Las Brujas. Por información adicional contacte bibliolb@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA Las Brujas. |
Fecha : |
08/03/2022 |
Actualizado : |
02/12/2022 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Autor : |
RODRÍGUEZ NEIRA, J.D.; PERIPOLLI, E.; DE NEGREIROS M.P.M.; ESPIGOLAN, R.; LÓPEZ-CORREA R.; AGUILAR, I.; LOBO R.B.; BALDI, F. |
Afiliación : |
JUAN DIEGO RODRIGUEZ NEIRA, Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil; ELISA PERIPOLLI, Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil; MARIA PAULA MARINHO DE NEGREIROS, Departamento de Medicina Veterinária, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo (Usp), Pirassununga, 13535-900, Brazil; RAFAEL ESPIGOLAN, Departamento de Medicina Veterinária, Faculdade de Zootecnia e Engenharia de Alimentos, Universidade de São Paulo (Usp), Pirassununga, 13535-900, Brazil; RODRIGO LÓPEZ-CORREA, Departamento de Genética y Mejoramiento Animal, Facultad de Veterinaria, Universidad de La República, Montevideo, Uruguay; IGNACIO AGUILAR GARCIA, INIA (Instituto Nacional de Investigación Agropecuaria), Uruguay; RAYSILDO B. LOBO, Associação Nacional de Criadores e Pesquisadores (ANCP), Ribeirão Preto, Brazil; FERNANDO BALDI, Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade Estadual Paulista (Unesp), Jaboticabal, 14884-900, Brazil. |
Título : |
Prediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP. |
Fecha de publicación : |
2022 |
Fuente / Imprenta : |
Journal of Applied Genetics, 2022, Volume 63, Issue 2, pages 389-400. doi: https://doi.org/10.1007/s13353-022-00685-0 |
ISSN : |
1234-1983 |
DOI : |
10.1007/s13353-022-00685-0 |
Idioma : |
Inglés |
Notas : |
Article history: Received 26 September 2021; Revised 25 January 2022; Accepted 2 February 2022.
Corresponding author: Rodriguez Neira, J.D.; Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade Estadual Paulista (Unesp), Jaboticabal, Brazil; email:juan.diego@unesp.br -- This study was supported in conjunction by Programa Estudantes Convênio de Pós-Graduação da Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (PECPG-CAPES, call no. 32/2017); the National Association of Breeders and Researchers (ANCP), the Programa Escala de Estudiantes de Pós-Graduação of Asociación de Universidades GRUPO MONTEVIDEO (PEEPg/AUGM-2019); the Universidade Estadual Paulista, Faculdade de Ciências Agrárias e Veterinárias (FCAV/Unesp); the Universidad de la Republica, Facultad de Veterinaria (UdelaR), Departamento de Genética y Mejoramiento Animal; and the Instituto Nacional de Investigación Agropecuaria of Uruguay (INIA). |
Contenido : |
ABSTRACT. - This study aimed to investigate the prediction ability for growth and maternal traits using different low-density customized SNP arrays selected by informativeness and distribution of markers across the genome employing single-step genomic BLUP (ssGBLUP). Phenotypic records for adjusted weight at 210 and 450 days of age were utilized. A total of 945 animals were genotyped with high-density chip, and 267 individuals born after 2008 were selected as validation population. We evaluated 11 scenarios using five customized density arrays (40 k, 20 k, 10 k, 5 k and 2 k) and the HD array was used as desirable scenario. The GEBV predictions and BIF (Beef Improvement Federation) accuracy were obtained with BLUPF90 family programs. Linear regression was used to evaluate the prediction ability, inflation, and bias of GEBV of each customized array. An overestimation of partial GEBVs in contrast with complete GEBVs and increase of BIF accuracy with the density arrays diminished were observed. For all traits, the prediction ability was higher as the array density increased and it was similar with customized arrays higher than 10 k SNPs. Level of inflation was lower as the density array increased of and was higher for MW210 effect. The bias was susceptible to overestimation of GEBVs when the density customized arrays decreased. These results revealed that the BIF accuracy is sensible to overestimation using low-density customized arrays while the prediction ability with least 10,000 informative SNPs obtained from the Illumina BovineHD BeadChip shows accurate and less biased predictions. Low-density customized arrays under ssGBLUP method could be feasible and cost-effective in genomic selection.
© 2022, The Author(s), under exclusive licence to Institute of Plant Genetics Polish Academy of Sciences. MenosABSTRACT. - This study aimed to investigate the prediction ability for growth and maternal traits using different low-density customized SNP arrays selected by informativeness and distribution of markers across the genome employing single-step genomic BLUP (ssGBLUP). Phenotypic records for adjusted weight at 210 and 450 days of age were utilized. A total of 945 animals were genotyped with high-density chip, and 267 individuals born after 2008 were selected as validation population. We evaluated 11 scenarios using five customized density arrays (40 k, 20 k, 10 k, 5 k and 2 k) and the HD array was used as desirable scenario. The GEBV predictions and BIF (Beef Improvement Federation) accuracy were obtained with BLUPF90 family programs. Linear regression was used to evaluate the prediction ability, inflation, and bias of GEBV of each customized array. An overestimation of partial GEBVs in contrast with complete GEBVs and increase of BIF accuracy with the density arrays diminished were observed. For all traits, the prediction ability was higher as the array density increased and it was similar with customized arrays higher than 10 k SNPs. Level of inflation was lower as the density array increased of and was higher for MW210 effect. The bias was susceptible to overestimation of GEBVs when the density customized arrays decreased. These results revealed that the BIF accuracy is sensible to overestimation using low-density customized arrays while the prediction ability with least 10... Presentar Todo |
Palabras claves : |
Accuracy; Beef cattle; Genomic selection; Inflation; Minor allele frequency; SNP arrays. |
Asunto categoría : |
L10 Genética y mejoramiento animal |
Marc : |
LEADER 03798naa a2200313 a 4500 001 1062807 005 2022-12-02 008 2022 bl uuuu u00u1 u #d 022 $a1234-1983 024 7 $a10.1007/s13353-022-00685-0$2DOI 100 1 $aRODRÍGUEZ NEIRA, J.D. 245 $aPrediction ability for growth and maternal traits using SNP arrays based on different marker densities in Nellore cattle using the ssGBLUP.$h[electronic resource] 260 $c2022 500 $aArticle history: Received 26 September 2021; Revised 25 January 2022; Accepted 2 February 2022. Corresponding author: Rodriguez Neira, J.D.; Departamento de Zootecnia, Faculdade de Ciências Agrarias e Veterinárias, Universidade Estadual Paulista (Unesp), Jaboticabal, Brazil; email:juan.diego@unesp.br -- This study was supported in conjunction by Programa Estudantes Convênio de Pós-Graduação da Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (PECPG-CAPES, call no. 32/2017); the National Association of Breeders and Researchers (ANCP), the Programa Escala de Estudiantes de Pós-Graduação of Asociación de Universidades GRUPO MONTEVIDEO (PEEPg/AUGM-2019); the Universidade Estadual Paulista, Faculdade de Ciências Agrárias e Veterinárias (FCAV/Unesp); the Universidad de la Republica, Facultad de Veterinaria (UdelaR), Departamento de Genética y Mejoramiento Animal; and the Instituto Nacional de Investigación Agropecuaria of Uruguay (INIA). 520 $aABSTRACT. - This study aimed to investigate the prediction ability for growth and maternal traits using different low-density customized SNP arrays selected by informativeness and distribution of markers across the genome employing single-step genomic BLUP (ssGBLUP). Phenotypic records for adjusted weight at 210 and 450 days of age were utilized. A total of 945 animals were genotyped with high-density chip, and 267 individuals born after 2008 were selected as validation population. We evaluated 11 scenarios using five customized density arrays (40 k, 20 k, 10 k, 5 k and 2 k) and the HD array was used as desirable scenario. The GEBV predictions and BIF (Beef Improvement Federation) accuracy were obtained with BLUPF90 family programs. Linear regression was used to evaluate the prediction ability, inflation, and bias of GEBV of each customized array. An overestimation of partial GEBVs in contrast with complete GEBVs and increase of BIF accuracy with the density arrays diminished were observed. For all traits, the prediction ability was higher as the array density increased and it was similar with customized arrays higher than 10 k SNPs. Level of inflation was lower as the density array increased of and was higher for MW210 effect. The bias was susceptible to overestimation of GEBVs when the density customized arrays decreased. These results revealed that the BIF accuracy is sensible to overestimation using low-density customized arrays while the prediction ability with least 10,000 informative SNPs obtained from the Illumina BovineHD BeadChip shows accurate and less biased predictions. Low-density customized arrays under ssGBLUP method could be feasible and cost-effective in genomic selection. © 2022, The Author(s), under exclusive licence to Institute of Plant Genetics Polish Academy of Sciences. 653 $aAccuracy 653 $aBeef cattle 653 $aGenomic selection 653 $aInflation 653 $aMinor allele frequency 653 $aSNP arrays 700 1 $aPERIPOLLI, E. 700 1 $aDE NEGREIROS M.P.M. 700 1 $aESPIGOLAN, R. 700 1 $aLÓPEZ-CORREA R. 700 1 $aAGUILAR, I. 700 1 $aLOBO R.B. 700 1 $aBALDI, F. 773 $tJournal of Applied Genetics, 2022, Volume 63, Issue 2, pages 389-400. doi: https://doi.org/10.1007/s13353-022-00685-0
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INIA Las Brujas (LB) |
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| Acceso al texto completo restringido a Biblioteca INIA La Estanzuela. Por información adicional contacte bib_le@inia.org.uy. |
Registro completo
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Biblioteca (s) : |
INIA La Estanzuela. |
Fecha actual : |
29/09/2014 |
Actualizado : |
06/11/2019 |
Tipo de producción científica : |
Artículos en Revistas Indexadas Internacionales |
Circulación / Nivel : |
B - 1 |
Autor : |
FREITAS-DE-MELO, A.; MORALES-PIÑEYRÚA, J.T.; UNGERFELD, R. |
Afiliación : |
JESSICA TATIANA MORALES PIÑEYRUA, Instituto Nacional de Investigación Agropecuaria (INIA), Uruguay./Departamento de Fisiología, Facultad de Veterinaria, Universidad de la República, Lasplaces 1550, Montevideo (11600), Uruguay. |
Título : |
Agonistic male-female and female-female behaviour in pampas deer (Ozotoceros bezoarticus). |
Fecha de publicación : |
2013 |
Fuente / Imprenta : |
North-Western Journal of Zoology, v.9,n.1, p.127-130, 2013. |
ISSN : |
1584-9074. |
Idioma : |
Inglés |
Notas : |
Article history: Received: 21. November 2011 / Accepted: 27. November 2012 / Available online: 13. January 2013 / Printed: June 2013. |
Palabras claves : |
AGRESIVIDAD; CÉRVIDOS; COMPORTAMIENTO AGONÍSTICO; CONSERVACIÓN; DOMINACIÓN SOCIAL; JERARQUÍA; OZOTOCERUS BEZOARTICUS; VENADO. |
Thesagro : |
BIENESTAR ANIMAL; REPRODUCCIÓN ANIMAL. |
Asunto categoría : |
L53 Fisiología Animal - Reproducción |
Marc : |
LEADER 00954naa a2200277 a 4500 001 1050663 005 2019-11-06 008 2013 bl uuuu u00u1 u #d 022 $a1584-9074. 100 1 $aFREITAS-DE-MELO, A. 245 $aAgonistic male-female and female-female behaviour in pampas deer (Ozotoceros bezoarticus).$h[electronic resource] 260 $c2013 500 $aArticle history: Received: 21. November 2011 / Accepted: 27. November 2012 / Available online: 13. January 2013 / Printed: June 2013. 650 $aBIENESTAR ANIMAL 650 $aREPRODUCCIÓN ANIMAL 653 $aAGRESIVIDAD 653 $aCÉRVIDOS 653 $aCOMPORTAMIENTO AGONÍSTICO 653 $aCONSERVACIÓN 653 $aDOMINACIÓN SOCIAL 653 $aJERARQUÍA 653 $aOZOTOCERUS BEZOARTICUS 653 $aVENADO 700 1 $aMORALES-PIÑEYRÚA, J.T. 700 1 $aUNGERFELD, R. 773 $tNorth-Western Journal of Zoology$gv.9,n.1, p.127-130, 2013.
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